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** MOLECULAR MECHANICS **
- NAMD -- recipient of a 2002 Gordon Bell Award , is a parallel molecular
dynamics code designed for high-performance simulation of large biomolecular systems. Based on
Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platforms and tens
of processors on commodity clusters using gigabit ethernet. NAMD is file-compatible with AMBER, CHARMM,
and X-PLOR and is distributed free of charge with source code.
taken from NAMD website: http://www.ks.uiuc.edu/Research/namd/
** MOLECULAR GRAPHICS**
- VMD -- is a molecular visualization program for displaying, animating, and analyzing large
biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS-X, Unix,
or Windows, is distributed free of charge, and includes source code.
taken from VMD website: http://www.ks.uiuc.edu/Research/vmd/
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